Research & Development World

  • R&D World Home
  • Topics
    • Aerospace
    • Automotive
    • Biotech
    • Careers
    • Chemistry
    • Environment
    • Energy
    • Life Science
    • Material Science
    • R&D Management
    • Physics
  • Technology
    • 3D Printing
    • A.I./Robotics
    • Software
    • Battery Technology
    • Controlled Environments
      • Cleanrooms
      • Graphene
      • Lasers
      • Regulations/Standards
      • Sensors
    • Imaging
    • Nanotechnology
    • Scientific Computing
      • Big Data
      • HPC/Supercomputing
      • Informatics
      • Security
    • Semiconductors
  • R&D Market Pulse
  • R&D 100
    • 2025 R&D 100 Award Winners
    • 2025 Professional Award Winners
    • 2025 Special Recognition Winners
    • R&D 100 Awards Event
    • R&D 100 Submissions
    • Winner Archive
  • Resources
    • Research Reports
    • Digital Issues
    • Educational Assets
    • R&D Index
    • Subscribe
    • Video
    • Webinars
    • Content submission guidelines for R&D World
  • Global Funding Forecast
  • Top Labs
  • Advertise
  • SUBSCRIBE

Scientists See Molecules ‘Breathe’ in Remarkable Detail

By Amanda Solliday, SLAC National Accelerator Laboratory | July 12, 2017

Laser light excited an electron in the central iron atom (red). The electron transferred to one of the attached bipyridine structures, and then returned to the iron atom 100 femtoseconds later. When the electron returned, it flipped the magnetism of the iron and set off a breath-like oscillation through the entire structure. (SLAC National Accelerator Laboratory)

In a milestone for studying a class of chemical reactions relevant to novel solar cells and memory storage devices, an international team of researchers working at the Department of Energy’s SLAC National Accelerator Laboratory used an X-ray laser to watch  “molecular breathing” – waves of subtle in-and-out motions of atoms – in real time and unprecedented detail.

These ripples of motion, seen with SLAC’s Linac Coherent Light Source (LCLS), allowed the team to study how energy is exchanged between light and electrons and leads to tension and eventually motion of atoms in an iron-based molecule that’s a model for transforming light to electric energy and switchable tiny molecular magnets.

In a paper published in Nature Communications, the research team said these high fidelity, real-time measurements of ultrafast energy redistribution can provide key information to understand the function of many chemical, physical and biological light-induced phenomena.

“It’s a significant leap in experiment sensitivity that now allows us to see more of what’s happening,” says Diling Zhu, staff scientist at SLAC. “We’re zooming into the details of molecules as we achieve better and better resolution in both space and time.”

The molecule they studied consists of a central iron atom attached to three double-ringed structures known as bipyridines.

To see it “breathe,” the scientists first hit the molecule with laser light and immediately followed up with an X-ray laser pulse to examine any changes that took place.

The laser light excited an electron in the central iron atom, which was transferred to one of the attached bipyridine structures. When the electron returned to the iron atom 100 femtoseconds, or quadrillionths of a second, later, it flipped the magnetism of the iron. This caused the molecule to expand, setting off a breath-like oscillation through the entire structure.

Previous measurements in experiments with optical lasers had indirectly revealed these motions, and it was suspected that bending of the bipyridine attachments contributed to the molecular motion.

But this experiment using more direct signals from X-rays showed that this explanation was incorrect. With each X-ray pulse lasting just 50 femtoseconds, the team could observe the electronic excitation by light and the following breathing process at much shorter intervals than ever before and obtain a more complete picture in real time.

Researchers hope that gained insights from molecular breathing will help them improve technologies such as dye-sensitized solar cells and memory storage.

Sensitized solar cells are a promising future alternative for cheap but efficient devices, but their light absorbing dyes often contain expensive rare metals like ruthenium. Scientists would like to use cheaper iron-based compounds instead, but magnetic switching that induces the molecular breathing stops the flow of electrical current across a solar cell.

“We see two competing processes in the molecule and their relation to molecular structure. With this information, we may find ways to change the molecular structure in order to favor the usable process for potential technical applications,” says Henrik Lemke, formerly a staff scientist at SLAC and now at SwissFEL’s Paul Scherrer Institute in Switzerland. Lemke is lead author of the study, which also included researchers from Sweden, Denmark, Italy, and France, as well as from SLAC.

“For other applications, the switch is actually desirable, so we could create a molecular memory system,” Lemke adds. “In memory storage devices, a reversible process could enable us to write and store data with the material.”

The experiment marks a significant step forward in the capability to visualize molecular dynamics at LCLS’s X-ray Pump Probe instrument, which was first commissioned in 2010. To generate sharper images of the molecular motion, scientists at LCLS have developed new methods for delivering samples into the path of the X-ray laser beam, as well as special data analysis techniques to account for various fluctuations that can blur the experiment.

The improvements also mean researchers are now able to collect higher quality data in less time. Scientists at LCLS can now acquire information that may have taken weeks to collect before in just a few minutes.

LCLS is a DOE Office of Science User Facility.

Citation:  Lemke et al., Nature Communications, 24 May 2017 (10.1038/ncomms15342)

Related Articles Read More >

R&D 100 red carpet recap: NETL team turns plastic waste into battery-grade graphite
R&D 100 Spotlight: Looping nylon recycles fishnets into medical grade nylon
R&D 100 Winner Spotlight: How Qnity beat the industry timeline on PFAS-free lithography
R&D 100 Red Carpet: DuPont’s triple win
rd newsletter
EXPAND YOUR KNOWLEDGE AND STAY CONNECTED
Get the latest info on technologies, trends, and strategies in Research & Development.
RD 25 Power Index

R&D World Digital Issues

Fall 2025 issue

Browse the most current issue of R&D World and back issues in an easy to use high quality format. Clip, share and download with the leading R&D magazine today.

R&D 100 Awards
Research & Development World
  • Subscribe to R&D World Magazine
  • Sign up for R&D World’s newsletter
  • Contact Us
  • About Us
  • Drug Discovery & Development
  • Pharmaceutical Processing
  • Global Funding Forecast

Copyright © 2026 WTWH Media LLC. All Rights Reserved. The material on this site may not be reproduced, distributed, transmitted, cached or otherwise used, except with the prior written permission of WTWH Media
Privacy Policy | Advertising | About Us

Search R&D World

  • R&D World Home
  • Topics
    • Aerospace
    • Automotive
    • Biotech
    • Careers
    • Chemistry
    • Environment
    • Energy
    • Life Science
    • Material Science
    • R&D Management
    • Physics
  • Technology
    • 3D Printing
    • A.I./Robotics
    • Software
    • Battery Technology
    • Controlled Environments
      • Cleanrooms
      • Graphene
      • Lasers
      • Regulations/Standards
      • Sensors
    • Imaging
    • Nanotechnology
    • Scientific Computing
      • Big Data
      • HPC/Supercomputing
      • Informatics
      • Security
    • Semiconductors
  • R&D Market Pulse
  • R&D 100
    • 2025 R&D 100 Award Winners
    • 2025 Professional Award Winners
    • 2025 Special Recognition Winners
    • R&D 100 Awards Event
    • R&D 100 Submissions
    • Winner Archive
  • Resources
    • Research Reports
    • Digital Issues
    • Educational Assets
    • R&D Index
    • Subscribe
    • Video
    • Webinars
    • Content submission guidelines for R&D World
  • Global Funding Forecast
  • Top Labs
  • Advertise
  • SUBSCRIBE